Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs57153202 chr2:29041324 AAAAG/A 0.000138 502 31.68 30.97 38.87 KM Plot
THCA rs57170831 chr7:16480528 T/C 3.97E-5 485 31.37 32.15 33.48 KM Plot
THCA rs57176306 chr6:133142168 C/T 0 502 31.47 33.48 29.05 KM Plot
THCA rs57201573 chr11:77955437 CAAAA/C 2.36E-5 500 32.48 30.63 27.3 KM Plot
THCA rs57244997 chr6:162397506 G/A 0.000105 500 31.4 32.77 14.08 KM Plot
THCA rs57321120 chr7:43944687 A/T 1.48E-9 503 31.27 33.5 31.03 KM Plot
THCA rs57393960 chr16:82257732 C/CAA 6.89E-5 499 28.73 30.42 32.77 KM Plot
THCA rs57459746 chr3:139259212 A/G 4.39E-10 502 31.53 33.63 19.32 KM Plot
THCA rs5768682 chr22:48895339 C/T 3.32E-5 491 32.03 31.4 27.1 KM Plot
THCA rs57777269 chr3:53966664 C/T 1.44E-8 497 31.5 30.6 17.8 KM Plot
THCA rs57821301 chr3:111592707 C/T 7.29E-9 492 31.87 28 17.77 KM Plot
THCA rs578348 chr1:41571317 A/T 6.72E-6 501 27.57 30.53 31.87 KM Plot
THCA rs57908821 chr7:32780375 G/A 6.5E-5 496 31.47 31.7 31.97 KM Plot
THCA rs57941717 chr21:38374179 G/T 9.09E-5 480 31.87 30.63 28.23 KM Plot
THCA rs57947974 chr7:43969953 C/A 2.61E-8 499 31.03 33.52 32.37 KM Plot